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Changelog

Source: NEWS.md

cophescan 1.4.3

CRAN release: 2026-03-18

  • Fixed nrow check in cophe.hyp.predict
  • Replaced dplyr::select_if with dplyr::select(-matches(...))
  • Fixed warning and error messages
  • Fixed spelling in documentation
  • Updated citation

cophescan 1.4.2

CRAN release: 2025-07-30

  • Fixed cross-references for documentation
  • Fixed formatting of messages

cophescan 1.4.1

CRAN release: 2024-06-11

  • Corrected cophe.susie input to accept only query trait datasets

cophescan 1.4.0

CRAN release: 2024-03-11

  • Set default values for fixed priors (pa and pc) in cophe.single and cophe.susie
  • Updated diagnostics of MCMC chains in vignettes
  • Fixed prior information added in vignette
  • Submitted to CRAN

cophescan 1.3.2

CRAN release: 2023-10-25

  • Changed one instance of print() to message()

cophescan 1.3.1

  • Changed plotting functions where querytrait and query_trait_names are now required arguments instead of optional in prepare_plot_data, get_beta, cophe_plot, cophe_heatmap
  • reset global user parameters after running vignettes
  • Updated vignettes

cophescan 1.3.0

  • Fixed minor note from CRAN auto-check of 1.2.0

cophescan 1.2.0

  • re-attempted CRAN submission but persistent note regarding access to internal functions

cophescan 1.1.0

  • 1.1.0 CRAN re-submission
  • Fixed warnings from CRAN auto-check of 1.0.0
  • RcppArmadillo only in LinkingTo and removed from imports
  • Updated vignettes

cophescan 1.0.0

  • Passed local R CMD checks and tested on R 4.3.1
  • Prepared package for CRAN submission

cophescan 0.1.0

  • Github version
  • Added a NEWS.md file to track changes to the package