cophe.single.lbf — cophe.single.lbf • cophescan

Calculate log bayes factors for each hypothesis (Single causal variant assumption)

cophe.single.lbf(dataset, querysnpid, querytrait, MAF = NULL)

Arguments

dataset: a list with specifically named elements defining the query trait dataset to be analysed.
querysnpid: Id of the query variant, (id in dataset$snp)
querytrait: Query trait name
MAF: Minor allele frequency vector

Value

data frame with log bayes factors for Hn and Ha hypotheses

See also

Author

Ichcha Manipur

Examples

library(cophescan)
data(cophe_multi_trait_data)
query_trait_1 <- cophe_multi_trait_data$summ_stat[['Trait_1']]
querysnpid <- cophe_multi_trait_data$querysnpid
res.single.lbf <- cophe.single.lbf(query_trait_1, querysnpid = querysnpid, querytrait='Trait_1')
res.single.lbf
#>     lBF.Ha   lBF.Hc nsnps       querysnp querytrait typeBF
#> 1 15.32189 11.96576  1000 chr19-11182353    Trait_1    ABF