Heatmap of multi-trait cophescan results — cophe_heatmap • cophescan

Heatmap of multi-trait cophescan results

cophe_heatmap(
  multi.dat,
  querysnpid,
  query_trait_names,
  thresh_Hc = 0.5,
  thresh_Ha = 0.5,
  ...
)

Arguments

multi.dat: multi trait cophescan results returned from cophe.multitrait or formatted in the same way with multitrait.simplify
querysnpid: query variant
query_trait_names: names of phenotypes corresponding to the multi.dat results
thresh_Hc: Hc threshold to be displayed
thresh_Ha: Ha threshold to be displayed
...: additional arguments to be passed to pheatmap

Value

heatmap of posterior probabilities of the phentypes above the set threshold