Plot region Manhattan for a trait highlighting the queried variant — plot_trait_manhat • cophescan

Plot region Manhattan for a trait highlighting the queried variant

plot_trait_manhat(trait.dat, querysnpid, alt.snpid = NULL)

Arguments

trait.dat: dataset used as input for running cophescan
querysnpid: the id of the causal variant as present in trait.dat$snp, plotted in red
alt.snpid: the id of the other variants as a vector to be plotted, plotted in blue

Value

regional manhattan plot