Prepare data for plotting

Source: R/copheplots.R

Prepare data for plotting

prepare_plot_data(
  multi.dat,
  querysnpid,
  query_trait_names,
  thresh_Ha = 0.5,
  thresh_Hc = 0.5,
  hmp = FALSE,
  cophe.plot = TRUE
)

Arguments

multi.dat

multi trait cophescan results returned from cophe.multitrait or multitrait.simplify

querysnpid

query variant

query_trait_names

vector of names of the query traits

thresh_Ha

Ha threshold to be displayed

thresh_Hc

Hc threshold to be displayed

hmp

return for heatmap

cophe.plot

default: TRUE, return for cophe_plot

Value

plot list